"Did you extract the Anope package before or after uploading it via FTP? If before, then that's a bad idea. Try uploading the package itself then extracting it on your shell using "tar -zxf anope-1.6.5.tar.gz"
"After the upload I ran the unpackage of the tar.gz by using: gunzip -d anope-1.6.5.tar.gz
tar xvf anope-1.6.5.tar"
Is previously stated i ran the unzip after the upload, which is why I am not sure what could be causing an issue. I know that uploading an unpacked service is not the best idea as data can be lost in a large upload or upload with several files, so I upload everything via tar, tar.gz.